PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s901541g001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family HSF
Protein Properties Length: 301aa    MW: 33427.4 Da    PI: 9.0368
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s901541g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.52.8e-35231162103
                        HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
       HSF_DNA-bind   2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                        Fl+k+y++++d+++++++sw  ++ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+kv  e+         weF+++ F+kg+k+
  PDK_30s901541g001  23 FLTKTYQLVDDPSTDHIVSWGdDRVSTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKVVPER---------WEFANEFFRKGEKH 105
                        9********************6667*****************************************999.........************** PP

                        XXXXXXXXXXX CS
       HSF_DNA-bind  93 llekikrkkse 103
                        ll++i+r+k++
  PDK_30s901541g001 106 LLCEIHRRKTS 116
                        ********987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.8E-3614108IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004159.3E-5919113IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467856.8E-3220113IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000565.3E-202346IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.7E-3023113IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.3E-206274IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406387IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.3E-207587IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MERCWESGGG GAVEAHKAVP APFLTKTYQL VDDPSTDHIV SWGDDRVSTF VVWRPPEFAR  60
DLLPNYFKHN NFSSFVRQLN TYGFRKVVPE RWEFANEFFR KGEKHLLCEI HRRKTSNSAA  120
PSPSSPPLFP PHHLPLYHHF PDDHHLENER LRRNNAALLS ELAHMRKLYN DIIYFVQNHV  180
RPVAPSSAAS TLLLSATNAG GAGSFYHHRK GGLNSGGSTT SSSSLTIAEE PSPPLDNNTN  240
NNNGESSSAR PKLFGVPLGE RSTSTHKRGF HLDAPTSPST KPRLVLGEDL GLNLMPPSPP  300
T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A9e-221911817125Heat shock factor protein 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008779895.10.0PREDICTED: heat stress transcription factor B-4c-like
SwissprotQ9C6355e-94HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLM0U0J51e-127M0U0J5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P15370_0011e-126(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.13e-64heat shock transcription factor B4